Remove support for SQLServer (#1121)

Author: labkey-jeckels

module.properties

@@ -1,3 +1,2 @@
 ModuleClass: org.labkey.targetedms.TargetedMSModule
-SupportedDatabases: mssql, pgsql
 ManageVersion: true

resources/queries/targetedms/PTMPercentsPrepivot.sql

@@ -9,7 +9,7 @@ SELECT ci.ModifiedAreaProportion,
        ci.PeptideId.PeptideGroupId,
        psm.IndexAA,
        psm.StructuralModId,
-       -- Explicitly cast for SQLServer to avoid trying to add as numeric types
+       -- Explicitly cast to avoid trying to add as numeric types
        (SUBSTRING(ci.PeptideId.Sequence, IndexAA + 1, 1)) || CAST(ci.PeptideId.StartIndex + IndexAA + 1 AS VARCHAR) AS SiteLocation
 FROM
      targetedms.GeneralMoleculeChromInfo ci LEFT JOIN

resources/schemas/dbscripts/postgresql/targetedms-0.000-24.000.sql

@@ -3925,8 +3925,6 @@ ALTER TABLE targetedms.spectrumlibrary ALTER COLUMN FileNameHint TYPE VARCHAR(30
 ALTER TABLE targetedms.IsotopeModification ALTER COLUMN AminoAcid TYPE VARCHAR(100);
 ALTER TABLE targetedms.StructuralModification ALTER COLUMN AminoAcid TYPE VARCHAR(100);
 
-SELECT core.executeJavaInitializationCode('recalculateAreaProportions');
-
 ALTER TABLE targetedms.SampleFile ADD IRTSlope REAL;
 ALTER TABLE targetedms.SampleFile ADD IRTIntercept REAL;
 ALTER TABLE targetedms.SampleFile ADD IRTCorrelation REAL;
@@ -4151,9 +4149,6 @@ ALTER TABLE targetedms.ReplicateAnnotation DROP COLUMN source;
 
 ALTER TABLE targetedms.QCAnnotation ADD COLUMN EndDate TIMESTAMP;
 
--- Poke a new row annotation type into the /Shared project
-SELECT core.executeJavaInitializationCode('addInstrumentDowntimeAnnotationType');
-
 UPDATE targetedms.QCMetricConfiguration SET EnabledQueryName = 'QCMetricEnabled_precursorAndTransitionAreas', EnabledSchemaName = 'targetedms' WHERE Name = 'Transition/Precursor Area Ratio';
 UPDATE targetedms.QCMetricConfiguration SET EnabledQueryName = 'QCMetricEnabled_precursorAndTransitionAreas', EnabledSchemaName = 'targetedms' WHERE Name = 'Transition & Precursor Areas';
 UPDATE targetedms.QCMetricConfiguration SET EnabledQueryName = 'QCMetricEnabled_precursorAndTransitionAreas', EnabledSchemaName = 'targetedms' WHERE Name = 'Total Peak Area (Precursor + Transition)';