Fix HTML

Author: labkey-nicka

src/org/labkey/remoteapi/query/SaveRowsApiCommand.java

@@ -25,35 +25,35 @@
  * <p>
  * Example usage:
  * <pre><code>
- * ApiKeyCredentialsProvider credentials = new ApiKeyCredentialsProvider("xxx");
- * Connection conn = new Connection("http://localhost:8080", credentials);
- * SaveRowsApiCommand saveCmd = new SaveRowsApiCommand();
+ *  ApiKeyCredentialsProvider credentials = new ApiKeyCredentialsProvider("xxx");
+ *  Connection conn = new Connection("http://localhost:8080", credentials);
+ *  SaveRowsApiCommand saveCmd = new SaveRowsApiCommand();
  *
- * // Add new gene annotations
- * saveCmd.addCommand(new Command(CommandType.Insert, "genome", "GeneAnnotations",
- *     List.of(
- *         Map.of("name", "p53 binding site", "geneName", "TP53", "start", 1000, "end", 1020),
- *         Map.of("name", "TATA box", "geneName", "BRCA1", "start", 2500, "end", 2506)
- *     )));
+ *  // Add new gene annotations
+ *  saveCmd.addCommand(new Command(CommandType.Insert, "genome", "GeneAnnotations",
+ *      List.of(
+ *          Map.of("name", "p53 binding site", "geneName", "TP53", "start", 1000, "end", 1020),
+ *          Map.of("name", "TATA box", "geneName", "BRCA1", "start", 2500, "end", 2506)
+ *      )));
  *
- * // Update annotation positions
- * Command updateCmd = new Command(CommandType.Update, "genome", "GeneAnnotations",
- *     List.of(Map.of(
- *         "name", "Promoter region",
- *         "geneName", "EGFR",
- *         "start", 5000,
- *         "end", 5500
- *     )));
- * updateCmd.setAuditBehavior(SaveRowsCommand.AuditBehavior.DETAILED);
- * updateCmd.setAuditUserComment("Updated promoter region coordinates based on new assembly");
- * saveCmd.addCommand(updateCmd);
+ *  // Update annotation positions
+ *  Command updateCmd = new Command(CommandType.Update, "genome", "GeneAnnotations",
+ *      List.of(Map.of(
+ *          "name", "Promoter region",
+ *          "geneName", "EGFR",
+ *          "start", 5000,
+ *          "end", 5500
+ *      )));
+ *  updateCmd.setAuditBehavior(SaveRowsCommand.AuditBehavior.DETAILED);
+ *  updateCmd.setAuditUserComment("Updated promoter region coordinates based on new assembly");
+ *  saveCmd.addCommand(updateCmd);
  *
- * // Delete obsolete annotation
- * saveCmd.addCommand(new Command(CommandType.Delete, "genome", "GeneAnnotations",
- *     List.of(Map.of("name", "Putative enhancer", "geneName", "MYC"))));
+ *  // Delete obsolete annotation
+ *  saveCmd.addCommand(new Command(CommandType.Delete, "genome", "GeneAnnotations",
+ *      List.of(Map.of("name", "Putative enhancer", "geneName", "MYC"))));
  *
- * // Execute all commands in a transaction
- * SaveRowsApiResponse response = saveCmd.execute(conn, "GenomeProject");
+ *  // Execute all commands in a transaction
+ *  SaveRowsApiResponse response = saveCmd.execute(conn, "GenomeProject");
  * </code></pre>
  */
 public class SaveRowsApiCommand extends PostCommand<SaveRowsApiResponse>

src/org/labkey/remoteapi/query/SaveRowsApiResponse.java

@@ -20,46 +20,46 @@
  * <p>
  * Example usage:
  * <pre><code>
- * SaveRowsApiCommand cmd = new SaveRowsApiCommand();
- * // Add commands to insert/update/delete gene annotations...
- * SaveRowsApiResponse response = cmd.execute(connection, "GenomeProject");
+ *  SaveRowsApiCommand cmd = new SaveRowsApiCommand();
+ *  // Add commands to insert/update/delete gene annotations...
+ *  SaveRowsApiResponse response = cmd.execute(connection, "GenomeProject");
  *
- * if (response.isCommitted())
- * {
- *     for (SaveRowsApiResponse.Result result : response.getResults())
- *     {
- *         System.out.println(String.format(
- *             "%s operation affected %d rows in %s.%s",
- *             result.getCommand(),
- *             result.getRowsAffected(),
- *             result.getSchemaName(),
- *             result.getQueryName()
- *         ));
+ *  if (response.isCommitted())
+ *  {
+ *      for (SaveRowsApiResponse.Result result : response.getResults())
+ *      {
+ *          System.out.println(String.format(
+ *              "%s operation affected %d rows in %s.%s",
+ *              result.getCommand(),
+ *              result.getRowsAffected(),
+ *              result.getSchemaName(),
+ *              result.getQueryName()
+ *          ));
  *
- *         // For detailed examination of affected rows
- *         for (Map<String, Object> row : result.getRows())
- *         {
- *             System.out.println(String.format(
- *                 "Gene %s annotation at position %d-%d",
- *                 row.get("geneName"),
- *                 row.get("start"),
- *                 row.get("end")
- *             ));
- *         }
+ *          // For detailed examination of affected rows
+ *          for (Map&gt;String, Object> row : result.getRows())
+ *          {
+ *              System.out.println(String.format(
+ *                  "Gene %s annotation at position %d-%d",
+ *                  row.get("geneName"),
+ *                  row.get("start"),
+ *                  row.get("end")
+ *              ));
+ *          }
  *
- *         // Check if operation was audited
- *         if (result.getTransactionAuditId() > 0)
- *         {
- *             System.out.println("Audit record created with ID: " +
- *                 result.getTransactionAuditId());
- *         }
- *     }
- * }
- * else
- * {
- *     System.out.println("Transaction failed with " +
- *         response.getErrorCount() + " errors");
- * }
+ *          // Check if operation was audited
+ *          if (result.getTransactionAuditId() > 0)
+ *          {
+ *              System.out.println("Audit record created with ID: " +
+ *                result.getTransactionAuditId());
+ *          }
+ *      }
+ *  }
+ *  else
+ *  {
+ *      System.out.println("Transaction failed with " +
+ *          response.getErrorCount() + " errors");
+ *  }
  * </code></pre>
  */
 public class SaveRowsApiResponse extends CommandResponse