Specify source root for CodeQL initialization (#188)

Remove manual build step

Author: labkey-tchad

.github/workflows/codeql.yml

@@ -46,7 +46,7 @@ jobs:
         - language: actions
           build-mode: none
         - language: java-kotlin
-          build-mode: manual # This mode only analyzes Java. Set this to 'autobuild' or 'manual' to analyze Kotlin too.
+          build-mode: none # This mode only analyzes Java. Set this to 'autobuild' or 'manual' to analyze Kotlin too.
         - language: javascript-typescript
           build-mode: none
         # CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'rust', 'swift'
@@ -80,6 +80,7 @@ jobs:
     - name: Initialize CodeQL
       uses: github/codeql-action/init@v4
       with:
+        source-root: server/modules/OConnorLabModules
         languages: ${{ matrix.language }}
         build-mode: ${{ matrix.build-mode }}
         # If you wish to specify custom queries, you can do so here or in a config file.