Re-add logging

labkey-tchad · labkey-tchad · commit f428678156f1 · 2025-01-09T10:45:43.000-08:00
diff --git a/SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/run/AbstractCommandWrapper.java b/SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/run/AbstractCommandWrapper.java
@@ -204,6 +204,11 @@ private void setPath(ProcessBuilder pb)
         if (!StringUtils.isEmpty(toolDir))
         {
             String path = System.getenv("PATH");
+
+            getLogger().debug("Existing PATH: " + path);
+            getLogger().debug("toolDir: " + toolDir);
+
+
             if (path == null)
             {
                 path = toolDir;

Original file line number	Diff line number	Diff line change
`@@ -204,6 +204,11 @@ private void setPath(ProcessBuilder pb)`
`204`	`204`	`if (!StringUtils.isEmpty(toolDir))`
`205`	`205`	`{`
`206`	`206`	`String path = System.getenv("PATH");`
	`207`	`+`
	`208`	`+ getLogger().debug("Existing PATH: " + path);`
	`209`	`+ getLogger().debug("toolDir: " + toolDir);`
	`210`	`+`
	`211`	`+`
`207`	`212`	`if (path == null)`
`208`	`213`	`{`
`209`	`214`	`path = toolDir;`