Skip to content

Commit ea6630a

Browse files
committed
Update location of cutadapt to use relative symlink
1 parent c413fbc commit ea6630a

File tree

1 file changed

+2
-1
lines changed

1 file changed

+2
-1
lines changed

SequenceAnalysis/pipeline_code/sequence_tools_install.sh

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -872,7 +872,8 @@ then
872872
else
873873
CUTADAPT_BRANCH=v4.0
874874
$PIP_EXE install --target ${LKTOOLS_DIR}/cutadapt_pip git+https://github.com/marcelm/cutadapt.git@${CUTADAPT_BRANCH}
875-
ln -s ${LKTOOLS_DIR}/cutadapt_pip/bin/cutadapt ${LKTOOLS_DIR}/cutadapt
875+
cd ${LKTOOLS_DIR}
876+
ln -s ./cutadapt_pip/bin/cutadapt cutadapt
876877
fi
877878
else
878879
echo "Already installed"

0 commit comments

Comments
 (0)