Skip to content

Commit d9ac32c

Browse files
committed
Expand studies datasets
1 parent 4581058 commit d9ac32c

39 files changed

+1496
-19
lines changed
Lines changed: 11 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
1+
value
2+
g
3+
IU
4+
U
5+
mEq
6+
mg
7+
no units
8+
ug
9+
units
10+
L/min
11+
%
Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,6 @@
1+
value
2+
Alive
3+
Dead
4+
No Record
5+
Shipped
6+
Unknown
Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,12 @@
1+
value denominator numerator
2+
g/ml mL g
3+
g/tsp tsp g
4+
IU/ml mL IU
5+
mEq/ml mL mEq
6+
mg/capsule capsule(s) mg
7+
mg/ml mL mg
8+
mg/piece piece(s) mg
9+
mg/tablet tablet(s) mg
10+
mg/tsp tsp mg
11+
ug/ml mL ug
12+
units/ml mL units
Lines changed: 11 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
1+
value numerator denominator
2+
g/kg g kg
3+
IU/kg IU kg
4+
mEq/kg mEq kg
5+
mg/animal mg
6+
mg/kg mg kg
7+
ml/kg ml kg
8+
no units
9+
ounces/kg ounces kg
10+
ug/kg ug kg
11+
units/kg units kg
Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,4 @@
1+
v meaning origgender
2+
f Female f
3+
m Male m
4+
u Unknown
Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,4 @@
1+
value
2+
Indian
3+
Chinese
4+
Hybrid
Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,9 @@
1+
setname label keyfield titleColumn
2+
amount_units Amount Units unit
3+
calculated_status_codes Calculated Status Codes code
4+
conc_units Concentraiton Units unit
5+
dosage_units Dosage Units unit
6+
gender_codes Gender Codes
7+
geographic_origins Geographic Origins origin
8+
routes Routes route
9+
volume_units Volume Units unit

Studies/resources/data/reports.tsv

Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,12 @@
1+
reportname category reporttype reporttitle visible containerpath schemaname queryname viewname report datefieldname todayonly queryhaslocation sort_order QCStateLabelFieldName description
2+
activeAssignments Assignments and Groups query Active Assignments true study Assignment Active Assignments date false false qcstate/publicdata This report shows the active assignments for each animal
3+
assignmentHistory Assignments and Groups query Assignment History true study Assignment date false false qcstate/publicdata This report shows all assignments records for the animals
4+
activeGroups Assignments and Groups query Active Groups true study animal_group_members Active Members date false false qcstate/publicdata This report shows the active assignments for each animal
5+
groupHistory Assignments and Groups query Group History true study animal_group_members date false false qcstate/publicdata This report shows all assignments records for the animals
6+
microbiology Lab Results query Microbiology true study Microbiology Results date false false qcstate/publicdata
7+
biochemistry Lab Results js Biochemistry true study bloodChemistry date false false Contains results of chemistry panels. Can be displayed either by panel, or showing reference ranges
8+
clinPathRuns Lab Results query Lab Runs true study Clinpath Runs date false false qcstate/publicdata Contains all clinpath requests
9+
iStat Lab Results js iStat true study iStat date false false qcstate/publicdata Contains iStat results
10+
hematology Lab Results js Hematology true study hematology date false false Contains hematology data showing cell subsets
11+
parasitology Lab Results query Parasitology true study Parasitology Results date false false qcstate/publicdata Contains results of parasitology testing
12+
urinalysis Lab Results js Urinalysis true study urinalysisResults date false false Contains urinalysis results

Studies/resources/data/routes.tsv

Lines changed: 24 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,24 @@
1+
value title
2+
IM
3+
intracardiac
4+
intracarotid
5+
intracorneal Intracorneal
6+
intracranial
7+
IP intraperitoneal
8+
ID
9+
INH
10+
IT
11+
IV
12+
CRI
13+
IVAG
14+
oral
15+
PO
16+
rectal
17+
Spillage
18+
SQ
19+
OU
20+
OD
21+
OS
22+
topical
23+
topical (eye)
24+
topical (skin)

Studies/resources/data/species.tsv

Lines changed: 10 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,10 @@
1+
common scientific_name id_prefix mhc_prefix blood_per_kg max_draw_pct blood_draw_interval cites_code dateDisabled
2+
Baboon 60 0.2 30
3+
Cotton-top Tamarin Saguinus oedipus so Saoe 60 0.2 30
4+
Cynomolgus Macaca fascicularis cy Mafa 60 0.2 30
5+
Marmoset Callithrix jacchus cj Caja 60 0.15 30
6+
Pigtail Macaca Nemestrina Mane 60 0.2 30
7+
Rhesus Macaca mulatta r|rh Mamu 60 0.2 30
8+
Sooty Mangabey Cercocebus atys Ceat 60 0.2 30
9+
Stump Tailed Macaca Arctoides Maar 60 0.2 30
10+
Vervet Chlorocebus sabaeus ag Chsa 60 0.2 30

0 commit comments

Comments
 (0)