Use SetUpProperties instead of DoThenSetup to cover DeployApp as well as pickX tasks (#391)

Author: labkey-susanh

SequenceAnalysis/build.gradle

@@ -1,7 +1,7 @@
 import org.labkey.gradle.plugin.TeamCity
 import org.labkey.gradle.plugin.extension.ServerDeployExtension
 import org.labkey.gradle.plugin.extension.TeamCityExtension
-import org.labkey.gradle.task.DoThenSetup
+import org.labkey.gradle.task.SetUpProperties
 import org.labkey.gradle.util.BuildUtils
 import org.labkey.gradle.util.GroupNames
 import org.labkey.gradle.util.PropertiesUtils
@@ -196,7 +196,7 @@ if (project.findProject(BuildUtils.getTestProjectPath(project.gradle)) != null &
             task.destinationDir = configDir
 
     }
-    testProject.tasks.withType(DoThenSetup).configureEach {
+    testProject.tasks.withType(SetUpProperties).configureEach {
         dependsOn(createPipelineConfigTask)
         it.doLast {
             new File(new File(BuildUtils.getEmbeddedConfigPath(project)), "application.properties")