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Skip inserting active modules if creating empty schemas (#372)
1 parent d4963ec commit 7a7fbaf

13 files changed

+49
-7
lines changed

‎OpenLdapSync/src/org/labkey/openldapsync/OpenLdapSyncModule.java‎

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -23,6 +23,7 @@
2323
import org.labkey.api.data.DbSchemaType;
2424
import org.labkey.api.module.Module;
2525
import org.labkey.api.module.ModuleContext;
26+
import org.labkey.api.module.ModuleLoader;
2627
import org.labkey.api.module.SpringModule;
2728
import org.labkey.api.query.DefaultSchema;
2829
import org.labkey.api.query.DetailsURL;
@@ -100,7 +101,8 @@ public boolean isAvailable(DefaultSchema schema, Module module)
100101
{
101102
modules = new HashSet<>(modules);
102103
modules.add(this);
103-
ContainerManager.getSharedContainer().setActiveModules(modules);
104+
if (ModuleLoader.getInstance().shouldInsertData())
105+
ContainerManager.getSharedContainer().setActiveModules(modules);
104106
}
105107
}
106108

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-0.00-11.20.sql‎

Lines changed: 12 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -129,6 +129,7 @@ WITH (OIDS=FALSE);
129129
-- ----------------------------
130130
-- Records of barcodes
131131
-- ----------------------------
132+
-- @SkipOnEmptySchemasBegin
132133
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID01', 'ACGAGTGCGT', 'GSMIDs');
133134
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID02', 'ACGCTCGACA', 'GSMIDs');
134135
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID03', 'AGACGCACTC', 'GSMIDs');
@@ -282,7 +283,7 @@ INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('
282283
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID151', 'TGCTAGTCAG', 'GSMIDs');
283284
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID152', 'TGTATCACAG', 'GSMIDs');
284285
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID153', 'TGTGCGCGTG', 'GSMIDs');
285-
286+
-- @SkipOnEmptySchemasEnd
286287

287288
-- ----------------------------
288289
-- Table structure for sequenceAnalysis.ref_nt_sequences
@@ -1061,6 +1062,7 @@ WITH (OIDS=FALSE)
10611062
-- ----------------------------
10621063
-- Records of sequenceAnalysis.dna_adapters
10631064
-- ----------------------------
1065+
-- @SkipOnEmptySchemasBegin
10641066
INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES
10651067
('Roche-454 FLX Amplicon A', 'Roche-454 FLX Amplicon', 'GCCTCCCTCGCGCCATCAG'),
10661068
('Roche-454 FLX Amplicon B', 'Roche-454 FLX Amplicon', 'GCCTTGCCAGCCCGCTCAG'),
@@ -1070,7 +1072,7 @@ INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES
10701072
('Roche-454 Titanium Library A', 'Roche-454 Titanium Library', 'CCATCTCATCCCTGCGTGTCTCCGACTCAG'),
10711073
('Roche-454 Titanium Library B', 'Roche-454 Titanium Library', 'CCTATCCCCTGTGTGCCTTGGCAGTCTCAG'),
10721074
('Nextera Transposon Adapter A', 'Nextera Adapters', 'AGATGTGTATAAGAGACAG');
1073-
1075+
-- @SkipOnEmptySchemasEnd
10741076

10751077

10761078
-- ----------------------------
@@ -1089,6 +1091,7 @@ WITH (OIDS=FALSE)
10891091
-- ----------------------------
10901092
-- Records of sequenceanalysis.dna_loci
10911093
-- ----------------------------
1094+
-- @SkipOnEmptySchemasBegin
10921095
INSERT INTO sequenceanalysis.dna_loci
10931096
VALUES
10941097
('MHC-A', '-a'),
@@ -1111,7 +1114,7 @@ VALUES
11111114
('HLA-A', 'hla-a'),
11121115
('HLA-B', 'hla-b'),
11131116
('HLA-C', 'hla-c');
1114-
1117+
-- @SkipOnEmptySchemasEnd
11151118

11161119

11171120

@@ -1130,7 +1133,9 @@ WITH (OIDS=FALSE)
11301133
-- ----------------------------
11311134
-- Records of sequenceAnalysis.ref_nt_category
11321135
-- ----------------------------
1136+
-- @SkipOnEmptySchemasBegin
11331137
INSERT INTO sequenceAnalysis.ref_nt_category (category) VALUES ('Virus'), ('DNA');
1138+
-- @SkipOnEmptySchemasEnd
11341139

11351140
-- ----------------------------
11361141
-- Table structure for sequenceanalysis.dna_region
@@ -1146,7 +1151,9 @@ WITH (OIDS=FALSE);
11461151
-- ----------------------------
11471152
-- Records of sequenceAnalysis.dna_region
11481153
-- ----------------------------
1154+
-- @SkipOnEmptySchemasBegin
11491155
INSERT INTO sequenceAnalysis.dna_region (region) VALUES ('KIR'), ('MHC');
1156+
-- @SkipOnEmptySchemasEnd
11501157

11511158
-- ----------------------------
11521159
-- Table structure for sequenceanalysis.geographic_origins
@@ -1657,12 +1664,13 @@ CREATE TABLE sequenceanalysis.analysis_types (
16571664
WITH (OIDS=FALSE)
16581665
;
16591666

1667+
-- @SkipOnEmptySchemasBegin
16601668
INSERT INTO sequenceanalysis.analysis_types
16611669
(type) VALUES
16621670
('Virus'),
16631671
('SBT')
16641672
;
1665-
1673+
-- @SkipOnEmptySchemasEnd
16661674

16671675

16681676
--foreign keys not necessary.

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-11.20-11.30.sql‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -51,6 +51,7 @@ WITH (OIDS=FALSE)
5151
-- ----------------------------
5252
-- Records of sequenceAnalysis.sequence_platforms
5353
-- ----------------------------
54+
-- @SkipOnEmptySchemasBegin
5455
INSERT INTO sequenceanalysis.sequence_platforms
5556
(platform,aliases)
5657
VALUES
@@ -62,11 +63,14 @@ VALUES
6263
('ION_TORRENT', 'IONTORRENT'),
6364
('SANGER', null)
6465
;
66+
-- @SkipOnEmptySchemasEnd
6567

6668
update sequenceAnalysis.sequence_reads set chemistry = 'LS454' where chemistry = 'Pyrosequencing';
6769

6870
delete from sequenceAnalysis.site_module_properties where prop_name = 'contactEmail';
71+
-- @SkipOnEmptySchemasBegin
6972
insert into sequenceAnalysis.site_module_properties (prop_name, stringValue) VALUES ('contactEmail', 'bbimber@labkey.com');
73+
-- @SkipOnEmptySchemasEnd
7074

7175
DROP TABLE IF EXISTS sequenceAnalysis.sequence_readsets;
7276
CREATE TABLE sequenceAnalysis.sequence_readsets (

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.10-12.20.sql‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -74,12 +74,14 @@ CREATE TABLE sequenceanalysis.quality_metrics_types (
7474
CONSTRAINT PK_quality_metrics_types PRIMARY KEY (type)
7575
);
7676

77+
-- @SkipOnEmptySchemasBegin
7778
INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Total Sequences');
7879
INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Filtered Sequences');
7980
INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Avg Sequence Length');
8081
INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Min Sequence Length');
8182
INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Max Sequence Length');
8283
INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('%GC');
84+
-- @SkipOnEmptySchemasEnd
8385

8486
ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN machine_run_id;
8587
ALTER TABLE sequenceanalysis.sequence_readsets ADD COLUMN instrument_run_id integer;
@@ -187,7 +189,9 @@ UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac239' WHERE name =
187189
UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac251' WHERE name = 'M19499';
188190
UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVsmE543' WHERE name = 'U72748.2';
189191

192+
-- @SkipOnEmptySchemasBegin
190193
INSERT INTO sequenceanalysis.sequence_platforms (platform) VALUES ('MIXED');
194+
-- @SkipOnEmptySchemasEnd
191195

192196
--delete duplicate epitopes accidentally entered
193197
update sequenceanalysis.ref_aa_features set comment = null where comment = '';

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.12-12.13.sql‎

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -38,7 +38,9 @@ UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac239' WHERE name =
3838
UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac251' WHERE name = 'M19499';
3939
UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVsmE543' WHERE name = 'U72748.2';
4040

41+
-- @SkipOnEmptySchemasBegin
4142
INSERT INTO sequenceanalysis.sequence_platforms (platform) VALUES ('MIXED');
43+
-- @SkipOnEmptySchemasEnd
4244

4345
--delete duplicate epitopes accidentally entered
4446
update sequenceanalysis.ref_aa_features set comment = null where comment = '';

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.20-12.21.sql‎

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -13,6 +13,7 @@
1313
* See the License for the specific language governing permissions and
1414
* limitations under the License.
1515
*/
16+
-- @SkipOnEmptySchemasBegin
1617
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N701', 'TCGCCTTA', 'Illumina');
1718
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N702', 'CTAGTACG', 'Illumina');
1819
INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N703', 'TTCTGCCT', 'Illumina');
@@ -420,3 +421,4 @@ INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('
420421
INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0382', 'AAGGTATGAG', 'Fluidigm');
421422
INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0383', 'ATGGAGCACT', 'Fluidigm');
422423
INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0384', 'ACGGTGCTAG', 'Fluidigm');
424+
-- @SkipOnEmptySchemasEnd

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.25-12.26.sql‎

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -17,7 +17,9 @@ ALTER TABLE sequenceanalysis.quality_metrics add column analysis_id integer;
1717

1818
ALTER TABLE sequenceanalysis.aa_snps_by_codon add column ref_nt_positions varchar(200);
1919

20+
-- @SkipOnEmptySchemasBegin
2021
INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('%Reads Aligned In Pairs');
2122
INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('Total Sequences Passed Filter');
2223
INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('Reads Aligned');
2324
INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('%Reads Aligned');
25+
-- @SkipOnEmptySchemasEnd

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.26-12.261.sql‎

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -2,16 +2,19 @@
22
-- insert into sequenceanalysis.aligners (haplotype,displayhaplotype,description,jsonconfig) values
33
-- ('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"},{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.local_alignment","fieldLabel":"Local Alignment Radius","renderData":{"helpPopup":"This option is only used for paired end data. If a value is supplied, a local alignment will be performed around paired end reads in order to attempt to rescue mates"},"minValue":0},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]');
44

5+
-- @SkipOnEmptySchemasBegin
56
INSERT INTO sequenceanalysis.haplotype_types (type) VALUES ('MHC-IA');
67
INSERT INTO sequenceanalysis.haplotype_types (type) VALUES ('MHC-IB');
78
INSERT INTO sequenceanalysis.haplotype_types (type) VALUES ('MHC-II');
9+
-- @SkipOnEmptySchemasEnd
810

911
ALTER table sequenceanalysis.haplotype_sequences DROP column haplotypeid;
1012
ALTER table sequenceanalysis.haplotype_sequences ADD column haplotype varchar(100);
1113
ALTER table sequenceanalysis.haplotype_sequences ADD column required boolean;
1214
UPDATE sequenceanalysis.haplotype_sequences SET required = true;
1315

1416
TRUNCATE sequenceanalysis.haplotypes;
17+
-- @SkipOnEmptySchemasBegin
1518
INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A001', 'MHC-IA');
1619
INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A002a', 'MHC-IA');
1720
INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A003', 'MHC-IA');
@@ -46,8 +49,10 @@ INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B048', 'MHC-IB');
4649
INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B055', 'MHC-IB');
4750
INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B069a', 'MHC-IB');
4851
INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B069b', 'MHC-IB');
52+
-- @SkipOnEmptySchemasEnd
4953

5054
TRUNCATE sequenceanalysis.haplotype_sequences;
55+
-- @SkipOnEmptySchemasBegin
5156
INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A001', 'Mamu-A1*001g', TRUE);
5257
INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A001', 'Mamu-A2*05g', FALSE);
5358
INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A002a', 'Mamu-A1*002g', TRUE);
@@ -210,4 +215,5 @@ INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VA
210215
INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*046g', FALSE);
211216
INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*060g', FALSE);
212217
INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*072g', FALSE);
218+
-- @SkipOnEmptySchemasEnd
213219
UPDATE sequenceanalysis.haplotype_sequences SET present = true;

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.265-12.266.sql‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -11,6 +11,7 @@ CREATE TABLE sequenceanalysis.illumina_applications (
1111
);
1212

1313
DELETE FROM sequenceanalysis.illumina_applications;
14+
-- @SkipOnEmptySchemasBegin
1415
INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Assembly', 1, 'Assembly', 'TruSeq LT,Nextera XT,Nextera,TruSeq HT', '{"OptionalGenome":null}', '', '');
1516
INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('ChIP-Seq', 1, 'GenerateFASTQ', 'TruSeq LT', '', '', '');
1617
INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Clone Checking', 1, 'GenerateFASTQ', 'Nextera XT,Nextera,TruSeq HT,TruSeq LT', '', '', '');
@@ -23,6 +24,7 @@ INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,co
2324
INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('RNA-Seq', 1, 'GenerateFASTQ', 'TruSeq LT,TruSeq HT', '', '', '');
2425
INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Small RNA', 1, 'SmallRNA', 'Small RNA', '', '[{"Label":"Genome Folder","Type":"GENOME","LabelInSampleSheet":"GenomeFolder","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"FALSE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"TRUE"},{"Label":"Contaminants","Type":"STRING","LabelInSampleSheet":"Contaminants","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"TRUE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"FALSE"},{"Label":"RNA","Type":"STRING","LabelInSampleSheet":"RNA","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"TRUE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"FALSE"},{"Label":"miRNA","Type":"STRING","LabelInSampleSheet":"miRNA","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"TRUE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"FALSE"}]', '');
2526
INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('TruSeq Amplicon', 1, 'Amplicon', 'TruSeq Amplicon', '{"Genome":null,"Manifest":null,"NoCustomPrimers":null}', '[{"Label":"Use Somatic Variant Caller (Recommended for Cancer Panel)","Type":"BOOL","LabelInSampleSheet":"VariantCaller","TrueVal":"Somatic","FalseVal":"NULL","DefaultVal":"FALSE","Required":"FALSE","DisplayAsCol":"FALSE"}]', '');
27+
-- @SkipOnEmptySchemasEnd
2628

2729
CREATE TABLE sequenceanalysis.illumina_genome_folders (
2830
label varchar(200),
@@ -45,12 +47,14 @@ CREATE TABLE sequenceanalysis.illumina_sample_kits (
4547
);
4648

4749
DELETE FROM sequenceanalysis.illumina_sample_kits;
50+
-- @SkipOnEmptySchemasBegin
4851
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Nextera', '{"Settings":[["NexteraManifest"],["Adapter","CTGTCTCTTATACACATCT"],["ManifestExtension","AmpliconManifest"]]}');
4952
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Nextera Enrichment', '{"Settings":[["Adapter","CTGTCTCTTATACACATCT"]]}');
5053
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Nextera XT', '{"Settings":[["NexteraManifest"],["Adapter","CTGTCTCTTATACACATCT"],["ManifestExtension","AmpliconManifest"]]}');
5154
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Small RNA', null);
5255
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('TruSeq Amplicon', '{"Settings":[["CAT"],["IndexOnly"],["PairedEndOnly"],["ManifestExtension","txt"]]}');
5356
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('TruSeq HT', '{"Settings":[["Adapter","AGATCGGAAGAGCACACGTC"]]}');
5457
INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('TruSeq LT', '{"Settings":[["Adapter","AGATCGGAAGAGCACACGTC"]]}');
58+
-- @SkipOnEmptySchemasEnd
5559

5660
DROP TABLE sequenceanalysis.illumina_templates;

‎SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.276-12.277.sql‎

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,9 @@ CREATE TABLE sequenceanalysis.sequence_applications (
66

77
ALTER TABLE sequenceanalysis.sequence_readsets add column application varchar(200);
88

9+
-- @SkipOnEmptySchemasBegin
910
INSERT INTO sequenceanalysis.sequence_applications (application) values ('RNA-seq');
1011
INSERT INTO sequenceanalysis.sequence_applications (application) values ('DNA Sequencing (Genome)');
1112
INSERT INTO sequenceanalysis.sequence_applications (application) values ('DNA Sequencing (Amplicon)');
1213
INSERT INTO sequenceanalysis.sequence_applications (application) values ('Other');
14+
-- @SkipOnEmptySchemasEnd

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