Remove false positives from OrphanFilePipelineJob warnings

bbimber · bbimber · commit 78a9da3269a8 · 2025-04-24T10:27:28.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/OrphanFilePipelineJob.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/OrphanFilePipelineJob.java
@@ -534,7 +534,7 @@ private void getOrphanFilesForDirectory(Set<Integer> knownExpDatas, Map<URI, Set
                         getJob().getLogger().warn("WARNING: Extremely large log file: " + f.getPath() + ", " + FileUtils.byteCountToDisplaySize(f.length()));
                     }
 
-                    if (f.getName().endsWith(".rds"))
+                    if (f.getName().endsWith(".rds") && !f.getName().endsWith("hashing.rawCounts.rds"))
                     {
                         if (!dataMap.containsKey(f.toURI()))
                         {

Original file line number	Diff line number	Diff line change
`@@ -534,7 +534,7 @@ private void getOrphanFilesForDirectory(Set<Integer> knownExpDatas, Map<URI, Set`
`534`	`534`	`getJob().getLogger().warn("WARNING: Extremely large log file: " + f.getPath() + ", " + FileUtils.byteCountToDisplaySize(f.length()));`
`535`	`535`	`}`
`536`	`536`
`537`		`- if (f.getName().endsWith(".rds"))`
	`537`	`+ if (f.getName().endsWith(".rds") && !f.getName().endsWith("hashing.rawCounts.rds"))`
`538`	`538`	`{`
`539`	`539`	`if (!dataMap.containsKey(f.toURI()))`
`540`	`540`	`{`