Handle nulls

labkey-jeckels · labkey-jeckels · commit 6d0aab370fb4 · 2025-12-03T11:45:25.000-08:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/SequenceNormalizationTask.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/SequenceNormalizationTask.java
@@ -365,7 +365,8 @@ public RecordedActionSet run() throws PipelineJobException
 
                         if (fp.file2 != null)
                         {
-                            localCopy = _wd.getWorkingCopyForInput(FileSystemLike.wrapFile(fp.file2)).toNioPathForRead().toFile();
+                            localCopyFileLike = _wd.getWorkingCopyForInput(FileSystemLike.wrapFile(fp.file2));
+                            localCopy = localCopyFileLike == null ? null : localCopyFileLike.toNioPathForRead().toFile();
                             if (localCopy != null)
                             {
                                 getJob().getLogger().debug("using local working copy for file: " + fp.file2.getPath());

Original file line number	Diff line number	Diff line change
`@@ -365,7 +365,8 @@ public RecordedActionSet run() throws PipelineJobException`
`365`	`365`
`366`	`366`	`if (fp.file2 != null)`
`367`	`367`	`{`
`368`		`- localCopy = _wd.getWorkingCopyForInput(FileSystemLike.wrapFile(fp.file2)).toNioPathForRead().toFile();`
	`368`	`+ localCopyFileLike = _wd.getWorkingCopyForInput(FileSystemLike.wrapFile(fp.file2));`
	`369`	`+ localCopy = localCopyFileLike == null ? null : localCopyFileLike.toNioPathForRead().toFile();`
`369`	`370`	`if (localCopy != null)`
`370`	`371`	`{`
`371`	`372`	`getJob().getLogger().debug("using local working copy for file: " + fp.file2.getPath());`