Fix missing newline in slurm submission

bbimber · bbimber · commit 698790499c3d · 2023-01-30T09:28:38.000-08:00
diff --git a/cluster/src/org/labkey/cluster/pipeline/SlurmExecutionEngine.java b/cluster/src/org/labkey/cluster/pipeline/SlurmExecutionEngine.java
@@ -435,7 +435,7 @@ private File createSubmitScript(PipelineJob job) throws PipelineJobException
                     if (disallowedNodes != null)
                     {
                         job.getLogger().debug("Disallowed nodes: " + StringUtils.join(ClusterManager.get().getDisallowedNodes(), ","));
-                        writer.write("#SBATCH --exclude=" + StringUtils.join(ClusterManager.get().getDisallowedNodes(), ","));
+                        writer.write("#SBATCH --exclude=" + StringUtils.join(ClusterManager.get().getDisallowedNodes(), ",") + "\n");
                     }
 
                     // This allows modules to register code to modify resource usage per task.

Original file line number	Diff line number	Diff line change
`@@ -435,7 +435,7 @@ private File createSubmitScript(PipelineJob job) throws PipelineJobException`
`435`	`435`	`if (disallowedNodes != null)`
`436`	`436`	`{`
`437`	`437`	`job.getLogger().debug("Disallowed nodes: " + StringUtils.join(ClusterManager.get().getDisallowedNodes(), ","));`
`438`		`- writer.write("#SBATCH --exclude=" + StringUtils.join(ClusterManager.get().getDisallowedNodes(), ","));`
	`438`	`+ writer.write("#SBATCH --exclude=" + StringUtils.join(ClusterManager.get().getDisallowedNodes(), ",") + "\n");`
`439`	`439`	`}`
`440`	`440`
`441`	`441`	`// This allows modules to register code to modify resource usage per task.`