Fix syntax in Plink/keep file

bbimber · bbimber · commit 643d0ee3a4e9 · 2022-10-06T06:03:59.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/PlinkPcaStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/PlinkPcaStep.java
@@ -98,7 +98,7 @@ private void addSubjectSelectOptions(String text, List<String> args, String argN
             try (CSVWriter writer = new CSVWriter(IOUtil.openFileForBufferedUtf8Writing(outputFile), '\t', CSVWriter.NO_QUOTE_CHARACTER))
             {
                 Arrays.stream(names).forEach(x -> {
-                    writer.writeNext(new String[]{x, x});
+                    writer.writeNext(new String[]{x});
                 });
             }
             catch (IOException e)

Original file line number	Diff line number	Diff line change
`@@ -98,7 +98,7 @@ private void addSubjectSelectOptions(String text, List<String> args, String argN`
`98`	`98`	`try (CSVWriter writer = new CSVWriter(IOUtil.openFileForBufferedUtf8Writing(outputFile), '\t', CSVWriter.NO_QUOTE_CHARACTER))`
`99`	`99`	`{`
`100`	`100`	`Arrays.stream(names).forEach(x -> {`
`101`		`- writer.writeNext(new String[]{x, x});`
	`101`	`+ writer.writeNext(new String[]{x});`
`102`	`102`	`});`
`103`	`103`	`}`
`104`	`104`	`catch (IOException e)`