Bugfix to SVtyper

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/SVTyperStep.java

@@ -113,12 +113,6 @@ else if (!svVcf.exists())
                 jsonArgs.add("-l");
                 jsonArgs.add(coverageJson.getPath());
 
-                if (threads != null)
-                {
-                    jsonArgs.add("--cores");
-                    jsonArgs.add(threads.toString());
-                }
-
                 File doneFile = new File(ctx.getWorkingDirectory(), "json.done");
                 ctx.getFileManager().addIntermediateFile(doneFile);
                 if (doneFile.exists())