Update SequenceAnalysisController.java

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisController.java

@@ -428,81 +428,7 @@ public void addNavTrail(NavTree tree)
             tree.addChild("Analyze Alignments");
         }
     }
-
-    @RequiresPermission(ReadPermission.class)
-    @IgnoresTermsOfUse
-    public static class DownloadTempImageAction extends ExportAction<TempImageAction>
-    {
-        @Override
-        public void export(TempImageAction form, HttpServletResponse response, BindException errors) throws Exception
-        {
-            File parentDir = form.getDirectory() == null ? FileUtil.getTempDirectory() : new File(FileUtil.getTempDirectory(), form.getDirectory());
-            File targetFile = new File(parentDir, form.getFileName());
-            targetFile = FileUtil.getAbsoluteCaseSensitiveFile(targetFile);
-
-            if (!NetworkDrive.exists(targetFile))
-            {
-                throw new FileNotFoundException("Could not find file: " + targetFile.getPath());
-            }
-
-            if (parentDir.listFiles() == null)
-            {
-                throw new FileNotFoundException("Unable to list the contents of folder: " + parentDir.getPath());
-            }
-
-            PageFlowUtil.streamFile(response, targetFile, false);
-
-            //the file will be recreated, so delete upon running
-            FileUtils.deleteQuietly(targetFile);
-
-            //if the folder if empty, remove it too.  other simultaneous requests might have deleted this folder before we get to it
-            if (parentDir != null && parentDir.exists())
-            {
-                File[] children = parentDir.listFiles();
-                if (children != null && children.length == 0 && !parentDir.equals(FileUtil.getTempDirectory()))
-                {
-                    FileUtils.deleteQuietly(parentDir); //the Images folder
-                    File parent = parentDir.getParentFile();
-                    FileUtils.deleteQuietly(parent); //the file's folder
-
-                    if (parent != null && parent.getParentFile() != null)
-                    {
-                        File[] children2 = parent.getParentFile().listFiles();
-                        if (children2 != null && children2.length == 0)
-                            FileUtils.deleteQuietly(parent.getParentFile()); //the file's folder
-                    }
-                }
-            }
-        }
-    }
-
-    @RequiresPermission(ReadPermission.class)
-    @IgnoresTermsOfUse
-    public static class ConvertTextToFileAction extends ExportAction<ConvertTextToFileForm>
-    {
-        @Override
-        public void export(ConvertTextToFileForm form, HttpServletResponse response, BindException errors) throws Exception
-        {
-            String text = form.getText();
-
-            if (text == null)
-            {
-                errors.reject(ERROR_MSG, "Need to provide text");
-                return;
-            }
-            if (form.getFileName() == null)
-            {
-                errors.reject(ERROR_MSG, "Need to provide a filename");
-                return;
-            }
-
-            Map<String, String> headers = new HashMap<>();
-
-            PageFlowUtil.prepareResponseForFile(response, headers, form.getFileName(), true);
-            response.getOutputStream().print(text);
-        }
-    }
-
+    
     @UtilityAction(label = "Find Orphan Files", description = "This will start a pipeline job that will inspect all files in this folder to identify potential orphan or otherwise unnecessary files")
     @RequiresPermission(ReadPermission.class)
     public static class FindOrphanFilesAction extends ConfirmAction<Object>
@@ -5318,4 +5244,4 @@ public void setDataFileUrl(String dataFileUrl)
             _dataFileUrl = dataFileUrl;
         }
     }
-}
+}