Correct field xtype

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/VariantProcessingJob.java

@@ -159,7 +159,7 @@ else if (_scatterGatherMethod == VariantProcessingStep.ScatterGatherMethod.fixed
 
     public boolean doAllowSplitContigs()
     {
-        return getParameterJson().optBoolean("scatterGather.allowSplitChromosomes", true);
+        return getParameterJson().optBoolean("scatterGather.allowSplitChromosomes", false);
     }
 
     public boolean isScatterJob()

singlecell/src/org/labkey/singlecell/pipeline/singlecell/CiteSeqDimReduxDist.java

@@ -23,7 +23,7 @@ public Provider()
                     SeuratToolParameter.create("performClrNormalization", "Perform CLR Normalization", "If true, Seurat CLR normalization will be performed. Otherwise any pre-existing normalization is used.", "checkbox", new JSONObject(){{
                         put("checked", true);
                     }}, true, "performClrNormalization", true),
-                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textbox", new JSONObject(){{
+                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textfield", new JSONObject(){{
 
                     }}, "ADT")
             ), null, null);

singlecell/src/org/labkey/singlecell/pipeline/singlecell/CiteSeqDimReduxPca.java

@@ -33,7 +33,7 @@ public Provider()
                         put("delimiter", ",");
                         put("stripCharsRe", "/['\"]/g");
                     }}, null).delimiter(","),
-                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textbox", new JSONObject(){{
+                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textfield", new JSONObject(){{
 
                     }}, "ADT")
             ), null, null);

singlecell/src/org/labkey/singlecell/pipeline/singlecell/CiteSeqPlots.java

@@ -20,7 +20,7 @@ public static class Provider extends AbstractPipelineStepProvider<SingleCellStep
         public Provider()
         {
             super("CiteSeqPlots", "CiteSeq/ADT Plots", "CellMembrane/Seurat", "This will create FeaturePlots for all features in the ADT assay.", Arrays.asList(
-                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textbox", new JSONObject(){{
+                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textfield", new JSONObject(){{
 
                     }}, "ADT")
             ), null, null);

singlecell/src/org/labkey/singlecell/pipeline/singlecell/PlotAverageCiteSeqCounts.java

@@ -28,7 +28,7 @@ public Provider()
                         put("delimiter", ",");
                         put("stripCharsRe", "/(^['\"]+)|(['\"]+$)/g");
                     }}, "ClusterNames_0.2,ClusterNames_0.4,ClusterNames_0.6").delimiter(","),
-                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textbox", new JSONObject(){{
+                    SeuratToolParameter.create("assayName", "Assay Name", "The assay to use", "textfield", new JSONObject(){{
 
                     }}, "ADT")
             ), Arrays.asList("/sequenceanalysis/field/TrimmingTextArea.js"), null);