Improve data QC

bbimber · bbimber · commit 16fc13604fd2 · 2025-04-07T12:13:03.000-07:00
diff --git a/singlecell/resources/queries/singlecell/samples.js b/singlecell/resources/queries/singlecell/samples.js
@@ -62,4 +62,12 @@ function beforeUpsert(row, oldRow, errors){
     if (['Lung R', 'Lung Right', 'Lung-Right'].indexOf(row.tissue) !== -1){
         row.tissue = 'Lung-R';
     }
+
+    if (['Bulk', 'bulk'].indexOf(row.assaytype) !== -1){
+        row.assaytype = 'Bulk cells';
+    }
+
+    if (['Peptide Stim-BFA', 'Peptide stim-BFA'].indexOf(row.assaytype) !== -1){
+        row.assaytype = 'Peptide Stim - BFA';
+    }
 }

Original file line number	Diff line number	Diff line change
`@@ -62,4 +62,12 @@ function beforeUpsert(row, oldRow, errors){`
`62`	`62`	`if (['Lung R', 'Lung Right', 'Lung-Right'].indexOf(row.tissue) !== -1){`
`63`	`63`	`row.tissue = 'Lung-R';`
`64`	`64`	`}`
	`65`	`+`
	`66`	`+ if (['Bulk', 'bulk'].indexOf(row.assaytype) !== -1){`
	`67`	`+ row.assaytype = 'Bulk cells';`
	`68`	`+ }`
	`69`	`+`
	`70`	`+ if (['Peptide Stim-BFA', 'Peptide stim-BFA'].indexOf(row.assaytype) !== -1){`
	`71`	`+ row.assaytype = 'Peptide Stim - BFA';`
	`72`	`+ }`
`65`	`73`	`}`