Bump the general-dependencies group with 5 updates (PedestrianDynamics#504)

Updates the requirements on [pytest](https://github.com/pytest-dev/pytest), [mypy](https://github.com/python/mypy), [ruff](https://github.com/astral-sh/ruff), [pre-commit](https://github.com/pre-commit/pre-commit) and [sphinx](https://github.com/sphinx-doc/sphinx) to permit the latest version.

Updates `pytest` to 9.0.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.4.0...9.0.1)

Updates `mypy` from 1.18.2 to 1.19.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.18.2...v1.19.0)

Updates `ruff` from 0.14.3 to 0.14.7
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.14.3...0.14.7)

Updates `pre-commit` from 4.3.0 to 4.5.0
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v4.3.0...v4.5.0)

---
updated-dependencies:
- dependency-name: pytest
  dependency-version: 9.0.1
  dependency-type: direct:production
  dependency-group: general-dependencies
- dependency-name: mypy
  dependency-version: 1.19.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: general-dependencies
- dependency-name: ruff
  dependency-version: 0.14.7
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: general-dependencies
- dependency-name: pre-commit
  dependency-version: 4.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: general-dependencies
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: dependabot[bot]

docs/requirements.txt

@@ -1,7 +1,7 @@
 sphinx~=8.2.3
 sphinx-copybutton==0.5.2
 sphinx_design==0.6.1
-myst-nb @ git+https://github.com/executablebooks/MyST-NB@59854c2
+myst-nb==1.3.0
 nbconvert==7.16.6
 sphinx-notfound-page==1.1.0
 sphinx-favicon==1.0.1

requirements.txt

@@ -6,7 +6,7 @@ matplotlib~=3.10,<4.0
 h5py~=3.13,<4.0
 
 # testing
-pytest~=8.4
+pytest~=9.0
 pytest-mock~=3.15
 pytest-cov~=7.0
 
@@ -16,7 +16,7 @@ click~=8.3
 build~=1.3
 
 # ci
-mypy==1.18.2
+mypy==1.19.0
 mypy-extensions==1.1.0
-ruff==0.14.3
-pre-commit==4.3.0
+ruff==0.14.7
+pre-commit==4.5.0