ci_pytest.yaml

name: ci_pytest

on:
  pull_request:
    branches:
      - main

jobs:
  build_and_test:
    runs-on: ubuntu-latest
    permissions:
        contents: read
        packages: write

    steps:
      - name: Checkout branch
        uses: actions/checkout@v4

      # See https://github.com/marketplace/actions/setup-micromamba
      - name: setup-micromamba
        uses: mamba-org/setup-micromamba@v1.9.0
        with:
          micromamba-version: '1.5.8-0'  # temporary fix as setup-mircomamba hangs with later mamba version
          environment-file: environment.yml
          environment-name: patchwork  # activate the environment
          cache-environment: true
          cache-downloads: true
          generate-run-shell: true

      - name: Run tests with pytest
        shell: micromamba-shell {0}
        run: python -m pytest ./test -s --log-cli-level DEBUG