Hello, I encountered the error 'ERROR Found in .addGeneScoreMat TmpGS for' while using ArchR to create createArrowFiles

[wujian-njau]

ArrowFiles <- createArrowFiles(
inputFiles = inputFiles,
sampleNames = names(inputFiles),
filterTSS = 4,
filterFrags = 1000,
addTileMat = TRUE,
addGeneScoreMat = TRUE,
geneAnnotation = geneAnnotation,
genomeAnnotation = genomeAnnotation
) 2026-05-29 16:48:06.934968 : ERROR Found in .addGeneScoreMat TmpGS for E17_B
LogFile = ArchRLogs\ArchR-createArrows-101861444221-Date-2026-05-29_Time-16-35-29.468801.log

<simpleError in doTryCatch(return(expr), name, parentenv, handler):
Error in gene boundaries - minError. The following gene ranges are causing problems and should be removed:
chr4:9-7472:-

[immanuelazn]

Hi @wujian-njau! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and feature requests should be posted in the Discussions section, not in Issues.

If you are getting an error, it is likely due to something specific to your dataset, usage, or computational environment, all of which are extremely challenging to troubleshoot. As such, we require reproducible examples (preferably using the tutorial dataset) from users who want assistance. If you cannot reproduce your error, we will not be able to help.
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