fastqc-gtz error

[JingzhX]

Hi,

Always got the following errors when trying to run on *.fq.gtz files:

"ERROR:Error: test.1.fq.gtz format error!(magic num error)
Started analysis of test.1.fq.gtz
Please waiting...
Analysis complete for test.1.fq.gtz
Failed to process file test.1.fq.gtz
java.lang.ArrayIndexOutOfBoundsException: -1
at uk.ac.babraham.FastQC.Modules.SequenceLengthDistribution.calculateDistribution(SequenceLengthDistribution.java:101)
at uk.ac.babraham.FastQC.Modules.SequenceLengthDistribution.raisesError(SequenceLengthDistribution.java:190)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:336)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.(HTMLReportArchive.java:84)
at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
at java.lang.Thread.run(Thread.java:748)

The gtz is able to decompress gtz files.

Any solutions? Thank you.

Jim

[bolunfeng]

sorry for the late reply. Please confirm if you can extract this file with gtz .(gtz version:2.1.2)