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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 439 89

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 323 116

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 146 6

  4. Tiberius Tiberius Public

    Tiberius is a deep learning gene finder.

    Python 83 9

  5. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 49 4

  6. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 35 4

Repositories

Showing 10 of 21 repositories
  • learnMSA Public

    Learning and Aligning Large Protein Families with support of protein language models.

    Gaius-Augustus/learnMSA’s past year of commit activity
    Python 28 MIT 5 4 0 Updated Dec 8, 2025
  • Tiberius Public

    Tiberius is a deep learning gene finder.

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 83 MIT 9 20 0 Updated Dec 1, 2025
  • hidten-docs Public

    Documentation for HidTen

    Gaius-Augustus/hidten-docs’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 28, 2025
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 49 6 12 0 Updated Nov 14, 2025
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 439 89 196 (3 issues need help) 3 Updated Oct 20, 2025
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 323 116 161 7 Updated Aug 15, 2025
  • VARUS Public

    RNA-Seq sampling

    Gaius-Augustus/VARUS’s past year of commit activity
    C++ 9 2 5 0 Updated Aug 8, 2025
  • varus-braker Public

    Pipeline combining raw genome-data and VARUS.bam (or RNA-seq data) and run BRAKER3 or BRAKER2

    Gaius-Augustus/varus-braker’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jul 14, 2025
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 21, 2025
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 146 6 12 1 Updated Jan 27, 2025
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