refactor: refactor plugins to extract and merge block from GEOS pvd mesh (#169)

* Refactor plugin to always extract and merge all the possible blocks

* Rename the plugin file

* Update GEOS output attribute name

Author: RomainBaville

docs/geos_pv_docs/processing.rst

@@ -47,28 +47,10 @@ PVClipToMainFrame
 Geos output pre-processing
 +++++++++++++++++++++++++++++
 
-PVExtractMergeBlocksVolume plugin
--------------------------------------------
-
-.. automodule:: geos.pv.plugins.PVExtractMergeBlocksVolume
-
-
-PVExtractMergeBlocksVolumeSurface plugin
---------------------------------------------------
-
-.. automodule:: geos.pv.plugins.PVExtractMergeBlocksVolumeSurface
-
-
-PVExtractMergeBlocksVolumeSurfaceWell plugin
-------------------------------------------------------
-
-.. automodule:: geos.pv.plugins.PVExtractMergeBlocksVolumeSurfaceWell
-
-
-PVExtractMergeBlocksVolumeWell plugin
------------------------------------------------
+PVGeosBlockExtractAndMerge plugin
+----------------------------------
 
-.. automodule:: geos.pv.plugins.PVExtractMergeBlocksVolumeWell
+.. automodule:: geos.pv.plugins.PVGeosBlockExtractAndMerge
 
 
 

docs/geos_pv_docs/utils.rst

@@ -24,6 +24,14 @@ geos.pv.utils.paraviewTreatments module
 ---------------------------------------------
 
 .. automodule:: geos.pv.utils.paraviewTreatments
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+geos.pv.utils.workflowFunctions module
+---------------------------------------
+
+.. automodule:: geos.pv.utils.workflowFunctions
    :members:
    :undoc-members:
    :show-inheritance:

geos-processing/src/geos/processing/post_processing/GeosBlockMerge.py

@@ -201,7 +201,7 @@ def computePhaseNames( self: Self ) -> None:
         """Get the names of the phases in the mesh from Cell attributes."""
         # All the phase attributes are on cells
         for name in getAttributeSet( self.inputMesh, False ):
-            if PHASE_SEP in name:
+            if PHASE_SEP in name and "dofIndex" not in name:
                 phaseName: str
                 suffixName: str
                 phaseName, suffixName = name.split( PHASE_SEP )