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See if VQSR results can be improved or remove comment in GATK4 pipeline #403

@tcezard

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@tcezard

Some commented out code was left in the Human GATK4 variant call pipeline because at the moment VQSR under performed during validation.
We should explore how this can be improved and if it can't the commented out code should be removed.
Same could be done on the dragen pipeline

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