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Add some indexes for agent store #3337

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Run time

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Job	Run time
build-and-check	2m 29s
test-integration-npm-app	37s
test-backend	52s
test-common	36s
test-integration-backend	39s
test-integration-common	39s
test-npm-app	45s
test-integration-.agents	36s
test-.agents	34s
	7m 47s