[PWGHF] Fix missing std prefix (#10231)

vkucera · web-flow · commit 9753c6ca2bf0 · 2025-02-27T18:21:53.000+01:00
diff --git a/PWGHF/D2H/Macros/HFInvMassFitter.cxx b/PWGHF/D2H/Macros/HFInvMassFitter.cxx
@@ -591,8 +591,8 @@ void HFInvMassFitter::calculateSignificance(Double_t& significance, Double_t& er
   Double_t sgnErrSquare = errSignal * errSignal;
   Double_t bkgErrSquare = errBkg * errBkg;
   Double_t totalSgnBkg = signal + bkg;
-  significance = signal / sqrt(signal + bkg);
-  errSignificance = significance * sqrt((sgnErrSquare + bkgErrSquare) / (mNSigmaForSidebands * totalSgnBkg * totalSgnBkg) + (bkg / totalSgnBkg) * (sgnErrSquare / signal / signal));
+  significance = signal / std::sqrt(signal + bkg);
+  errSignificance = significance * std::sqrt((sgnErrSquare + bkgErrSquare) / (mNSigmaForSidebands * totalSgnBkg * totalSgnBkg) + (bkg / totalSgnBkg) * (sgnErrSquare / signal / signal));
 }
 
 // estimate Signnal
diff --git a/PWGHF/D2H/Macros/runMassFitter.C b/PWGHF/D2H/Macros/runMassFitter.C
@@ -40,15 +40,15 @@ using namespace rapidjson;
 int runMassFitter(TString configFileName = "config_massfitter.json");
 
 template <typename ValueType>
-void readArray(const Value& jsonArray, vector<ValueType>& output)
+void readArray(const Value& jsonArray, std::vector<ValueType>& output)
 {
   for (auto it = jsonArray.Begin(); it != jsonArray.End(); it++) {
     auto value = it->template Get<ValueType>();
     output.emplace_back(value);
   }
 }
 
-void parseStringArray(const Value& jsonArray, vector<string>& output)
+void parseStringArray(const Value& jsonArray, std::vector<string>& output)
 {
   size_t arrayLength = jsonArray.Size();
   for (size_t i = 0; i < arrayLength; i++) {
diff --git a/PWGHF/D2H/TableProducer/dataCreatorCharmResoReduced.cxx b/PWGHF/D2H/TableProducer/dataCreatorCharmResoReduced.cxx
@@ -102,9 +102,9 @@ struct HfDataCreatorCharmResoReduced {
   Produces<aod::HfRedCollisions> hfReducedCollision; // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
   Produces<aod::HfOrigColCounts> hfCollisionCounter; // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
   // tracks, V0 and D candidates reduced tables
-  Produces<aod::HfRedVzeros> hfCandV0;   // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
+  Produces<aod::HfRedVzeros> hfCandV0;            // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
   Produces<aod::HfRedTrkNoParams> hfTrackNoParam; // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
-  Produces<aod::HfRed3PrNoTrks> hfCandD; // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
+  Produces<aod::HfRed3PrNoTrks> hfCandD;          // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
   // ML optional Tables
   Produces<aod::HfRed3ProngsMl> hfCandDMl; // Defined in PWGHF/D2H/DataModel/ReducedDataModel.h
   // MC Tables
@@ -368,7 +368,7 @@ struct HfDataCreatorCharmResoReduced {
     auto trackNegPar = getTrackPar(trackNeg);
     o2::base::Propagator::Instance()->propagateToDCABxByBz({collision.posX(), collision.posY(), collision.posZ()}, trackNegPar, 2.f, fitter.getMatCorrType(), &dcaInfo);
     auto trackNegDcaXY = dcaInfo[0];
-    if (fabs(trackPosDcaXY) < cfgV0Cuts.dcaMaxDauToPv || fabs(trackNegDcaXY) < cfgV0Cuts.dcaMaxDauToPv) {
+    if (std::fabs(trackPosDcaXY) < cfgV0Cuts.dcaMaxDauToPv || std::fabs(trackNegDcaXY) < cfgV0Cuts.dcaMaxDauToPv) {
       return false;
     }
     // vertex reconstruction
diff --git a/PWGHF/D2H/Tasks/taskLb.cxx b/PWGHF/D2H/Tasks/taskLb.cxx
@@ -66,7 +66,7 @@ struct HfTaskLb {
 
   bool passesImpactParameterResolution(float pT, float d0Resolution)
   {
-    float expectedResolution(0.001 + 0.0052 * exp(-0.655 * pT));
+    float expectedResolution(0.001 + 0.0052 * std::exp(-0.655 * pT));
     return (d0Resolution <= expectedResolution * 1.5);
   } // Compares to pT dependent cut on impact parameter resolution
 
diff --git a/PWGHF/HFC/Macros/ExtractOutputCorrel.C b/PWGHF/HFC/Macros/ExtractOutputCorrel.C
@@ -26,15 +26,15 @@
 using namespace rapidjson;
 
 template <typename ValueType>
-void readArray(const Value& jsonArray, vector<ValueType>& output)
+void readArray(const Value& jsonArray, std::vector<ValueType>& output)
 {
   for (auto it = jsonArray.Begin(); it != jsonArray.End(); it++) {
     auto value = it->template Get<ValueType>();
     output.emplace_back(value);
   }
 }
 
-void parseStringArray(const Value& jsonArray, vector<string>& output)
+void parseStringArray(const Value& jsonArray, std::vector<string>& output)
 {
   size_t arrayLength = jsonArray.Size();
   for (size_t i = 0; i < arrayLength; i++) {
@@ -45,7 +45,7 @@ void parseStringArray(const Value& jsonArray, vector<string>& output)
 }
 
 void SetInputCorrelNames(DhCorrelationExtraction* plotter, TString pathFileMass, TString pathFileSE, TString pathFileME, TString dirSE, TString dirME, TString histoNameCorrSignal, TString histoNameCorrSideba);
-void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, vector<string> inputMassNames);
+void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, std::vector<string> inputMassNames);
 
 void ExtractOutputCorrel(TString cfgFileName = "config_CorrAnalysis.json")
 {
@@ -185,7 +185,7 @@ void SetInputCorrelNames(DhCorrelationExtraction* plotter, TString pathFileMass,
   return;
 }
 
-void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, vector<string> inputMassNames)
+void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, std::vector<std::string> inputMassNames)
 { // to use if sgn and bkg extraction is done apart
 
   plotter->SetMassHistoNameSgn(inputMassNames[0].data());
diff --git a/PWGHF/HFC/Macros/FitCorrel.C b/PWGHF/HFC/Macros/FitCorrel.C
@@ -31,7 +31,7 @@
 using namespace rapidjson;
 
 template <typename ValueType>
-void readArray(const Value& jsonArray, vector<ValueType>& output)
+void readArray(const Value& jsonArray, std::vector<ValueType>& output)
 {
   for (auto it = jsonArray.Begin(); it != jsonArray.End(); it++) {
     auto value = it->template Get<ValueType>();
diff --git a/PWGHF/HFC/TableProducer/femtoDreamProducer.cxx b/PWGHF/HFC/TableProducer/femtoDreamProducer.cxx
@@ -249,7 +249,7 @@ struct HfFemtoDreamProducer {
       auto motherparticlesMc = particleMc.template mothers_as<aod::McParticles>();
       // check pdg code
       // if this fails, the particle is a fake
-      if (abs(pdgCode) == abs(trkPDGCode.value)) {
+      if (std::abs(pdgCode) == std::abs(trkPDGCode.value)) {
         // check first if particle is from pile up
         // check if the collision associated with the particle is the same as the analyzed collision by checking their Ids
         if ((col.has_mcCollision() && (particleMc.mcCollisionId() != col.mcCollisionId())) || !col.has_mcCollision()) {
diff --git a/PWGHF/TableProducer/candidateSelectorLbToLcPi.cxx b/PWGHF/TableProducer/candidateSelectorLbToLcPi.cxx
@@ -62,7 +62,7 @@ struct HfCandidateSelectorLbToLcPi {
 
   bool passesImpactParameterResolution(float pT, float d0Resolution)
   {
-    float expectedResolution(0.001 + 0.0052 * exp(-0.655 * pT));
+    float expectedResolution(0.001 + 0.0052 * std::exp(-0.655 * pT));
     if (d0Resolution > expectedResolution * 1.5)
       return false;
     else
@@ -149,7 +149,7 @@ struct HfCandidateSelectorLbToLcPi {
     float diffXVert = hfCandLb.xSecondaryVertex() - hfCandLc.xSecondaryVertex();
     float diffYVert = hfCandLb.ySecondaryVertex() - hfCandLc.ySecondaryVertex();
     float diffZVert = hfCandLb.zSecondaryVertex() - hfCandLc.zSecondaryVertex();
-    float vertexDistance = sqrt(diffXVert * diffXVert + diffYVert * diffYVert + diffZVert * diffZVert);
+    float vertexDistance = std::sqrt(diffXVert * diffXVert + diffYVert * diffYVert + diffZVert * diffZVert);
     if (vertexDistance > maxVertexDistanceLbLc) {
       return false;
     }
diff --git a/PWGHF/TableProducer/mcPidTof.cxx b/PWGHF/TableProducer/mcPidTof.cxx
@@ -593,7 +593,7 @@ struct tofEventTime {
           if constexpr (removeTOFEvTimeBias) {
             evTimeMakerTOF.removeBias<TrksWtof::iterator, filterForTOFEventTime>(trk, nGoodTracksForTOF, t0TOF[0], t0TOF[1], 2);
           }
-          if (t0TOF[1] < errDiamond && (maxEvTimeTOF <= 0 || abs(t0TOF[0]) < maxEvTimeTOF)) {
+          if (t0TOF[1] < errDiamond && (maxEvTimeTOF <= 0 || std::abs(t0TOF[0]) < maxEvTimeTOF)) {
             flags |= o2::aod::pidflags::enums::PIDFlags::EvTimeTOF;
 
             weight = 1.f / (t0TOF[1] * t0TOF[1]);
@@ -621,7 +621,7 @@ struct tofEventTime {
           } else {
             tableFlags(flags);
           }
-          tableEvTime(eventTime / sumOfWeights, sqrt(1. / sumOfWeights));
+          tableEvTime(eventTime / sumOfWeights, std::sqrt(1. / sumOfWeights));
           if (enableTableEvTimeTOFOnly) {
             tableEvTimeTOFOnly((uint8_t)filterForTOFEventTime(trk), t0TOF[0], t0TOF[1], evTimeMakerTOF.mEventTimeMultiplicity);
           }
@@ -657,7 +657,7 @@ struct tofEventTime {
             evTimeMakerTOF.removeBias<TrksWtof::iterator, filterForTOFEventTime>(trk, nGoodTracksForTOF, et, erret, 2);
           }
           uint8_t flags = 0;
-          if (erret < errDiamond && (maxEvTimeTOF <= 0.f || abs(et) < maxEvTimeTOF)) {
+          if (erret < errDiamond && (maxEvTimeTOF <= 0.f || std::abs(et) < maxEvTimeTOF)) {
             flags |= o2::aod::pidflags::enums::PIDFlags::EvTimeTOF;
           } else {
             et = 0.f;

Original file line number	Diff line number	Diff line change
`@@ -40,15 +40,15 @@ using namespace rapidjson;`
`40`	`40`	`int runMassFitter(TString configFileName = "config_massfitter.json");`
`41`	`41`
`42`	`42`	`template <typename ValueType>`
`43`		`-void readArray(const Value& jsonArray, vector<ValueType>& output)`
	`43`	`+void readArray(const Value& jsonArray, std::vector<ValueType>& output)`
`44`	`44`	`{`
`45`	`45`	`for (auto it = jsonArray.Begin(); it != jsonArray.End(); it++) {`
`46`	`46`	`auto value = it->template Get<ValueType>();`
`47`	`47`	`output.emplace_back(value);`
`48`	`48`	`}`
`49`	`49`	`}`
`50`	`50`
`51`		`-void parseStringArray(const Value& jsonArray, vector<string>& output)`
	`51`	`+void parseStringArray(const Value& jsonArray, std::vector<string>& output)`
`52`	`52`	`{`
`53`	`53`	`size_t arrayLength = jsonArray.Size();`
`54`	`54`	`for (size_t i = 0; i < arrayLength; i++) {`
Original file line number	Diff line number	Diff line change
`@@ -66,7 +66,7 @@ struct HfTaskLb {`
`66`	`66`
`67`	`67`	`bool passesImpactParameterResolution(float pT, float d0Resolution)`
`68`	`68`	`{`
`69`		`- float expectedResolution(0.001 + 0.0052 * exp(-0.655 * pT));`
	`69`	`+ float expectedResolution(0.001 + 0.0052 * std::exp(-0.655 * pT));`
`70`	`70`	`return (d0Resolution <= expectedResolution * 1.5);`
`71`	`71`	`} // Compares to pT dependent cut on impact parameter resolution`
`72`	`72`
Original file line number	Diff line number	Diff line change
`@@ -26,15 +26,15 @@`
`26`	`26`	`using namespace rapidjson;`
`27`	`27`
`28`	`28`	`template <typename ValueType>`
`29`		`-void readArray(const Value& jsonArray, vector<ValueType>& output)`
	`29`	`+void readArray(const Value& jsonArray, std::vector<ValueType>& output)`
`30`	`30`	`{`
`31`	`31`	`for (auto it = jsonArray.Begin(); it != jsonArray.End(); it++) {`
`32`	`32`	`auto value = it->template Get<ValueType>();`
`33`	`33`	`output.emplace_back(value);`
`34`	`34`	`}`
`35`	`35`	`}`
`36`	`36`
`37`		`-void parseStringArray(const Value& jsonArray, vector<string>& output)`
	`37`	`+void parseStringArray(const Value& jsonArray, std::vector<string>& output)`
`38`	`38`	`{`
`39`	`39`	`size_t arrayLength = jsonArray.Size();`
`40`	`40`	`for (size_t i = 0; i < arrayLength; i++) {`
`@@ -45,7 +45,7 @@ void parseStringArray(const Value& jsonArray, vector<string>& output)`
`45`	`45`	`}`
`46`	`46`
`47`	`47`	`void SetInputCorrelNames(DhCorrelationExtraction* plotter, TString pathFileMass, TString pathFileSE, TString pathFileME, TString dirSE, TString dirME, TString histoNameCorrSignal, TString histoNameCorrSideba);`
`48`		`-void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, vector<string> inputMassNames);`
	`48`	`+void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, std::vector<string> inputMassNames);`
`49`	`49`
`50`	`50`	`void ExtractOutputCorrel(TString cfgFileName = "config_CorrAnalysis.json")`
`51`	`51`	`{`
`@@ -185,7 +185,7 @@ void SetInputCorrelNames(DhCorrelationExtraction* plotter, TString pathFileMass,`
`185`	`185`	`return;`
`186`	`186`	`}`
`187`	`187`
`188`		`-void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, vector<string> inputMassNames)`
	`188`	`+void SetInputHistoInvMassNames(DhCorrelationExtraction* plotter, std::vector<std::string> inputMassNames)`
`189`	`189`	`{ // to use if sgn and bkg extraction is done apart`
`190`	`190`
`191`	`191`	`plotter->SetMassHistoNameSgn(inputMassNames[0].data());`
Original file line number	Diff line number	Diff line change
`@@ -31,7 +31,7 @@`
`31`	`31`	`using namespace rapidjson;`
`32`	`32`
`33`	`33`	`template <typename ValueType>`
`34`		`-void readArray(const Value& jsonArray, vector<ValueType>& output)`
	`34`	`+void readArray(const Value& jsonArray, std::vector<ValueType>& output)`
`35`	`35`	`{`
`36`	`36`	`for (auto it = jsonArray.Begin(); it != jsonArray.End(); it++) {`
`37`	`37`	`auto value = it->template Get<ValueType>();`
Original file line number	Diff line number	Diff line change
`@@ -593,7 +593,7 @@ struct tofEventTime {`
`593`	`593`	`if constexpr (removeTOFEvTimeBias) {`
`594`	`594`	`evTimeMakerTOF.removeBias<TrksWtof::iterator, filterForTOFEventTime>(trk, nGoodTracksForTOF, t0TOF[0], t0TOF[1], 2);`
`595`	`595`	`}`
`596`		`- if (t0TOF[1] < errDiamond && (maxEvTimeTOF <= 0 \|\| abs(t0TOF[0]) < maxEvTimeTOF)) {`
	`596`	`+ if (t0TOF[1] < errDiamond && (maxEvTimeTOF <= 0 \|\| std::abs(t0TOF[0]) < maxEvTimeTOF)) {`
`597`	`597`	`flags \|= o2::aod::pidflags::enums::PIDFlags::EvTimeTOF;`
`598`	`598`
`599`	`599`	`weight = 1.f / (t0TOF[1] * t0TOF[1]);`
`@@ -621,7 +621,7 @@ struct tofEventTime {`
`621`	`621`	`} else {`
`622`	`622`	`tableFlags(flags);`
`623`	`623`	`}`
`624`		`- tableEvTime(eventTime / sumOfWeights, sqrt(1. / sumOfWeights));`
	`624`	`+ tableEvTime(eventTime / sumOfWeights, std::sqrt(1. / sumOfWeights));`
`625`	`625`	`if (enableTableEvTimeTOFOnly) {`
`626`	`626`	`tableEvTimeTOFOnly((uint8_t)filterForTOFEventTime(trk), t0TOF[0], t0TOF[1], evTimeMakerTOF.mEventTimeMultiplicity);`
`627`	`627`	`}`
`@@ -657,7 +657,7 @@ struct tofEventTime {`
`657`	`657`	`evTimeMakerTOF.removeBias<TrksWtof::iterator, filterForTOFEventTime>(trk, nGoodTracksForTOF, et, erret, 2);`
`658`	`658`	`}`
`659`	`659`	`uint8_t flags = 0;`
`660`		`- if (erret < errDiamond && (maxEvTimeTOF <= 0.f \|\| abs(et) < maxEvTimeTOF)) {`
	`660`	`+ if (erret < errDiamond && (maxEvTimeTOF <= 0.f \|\| std::abs(et) < maxEvTimeTOF)) {`
`661`	`661`	`flags \|= o2::aod::pidflags::enums::PIDFlags::EvTimeTOF;`
`662`	`662`	`} else {`
`663`	`663`	`et = 0.f;`