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docs(bench): set default to 5k groups; document 30% outlier scenario
- Default benchmark: 5 rows/group, 5k groups (faster, still representative) - Added 30% outlier scenario to examples; clarified that response-only outliers don’t trigger slow robust re-fits - Updated example tables for Mac and Linux with new per-1k-group timings - (optional) bench CLI default --groups=5000
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UTILS/dfextensions/bench_groupby_regression.py

Lines changed: 26 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -168,6 +168,31 @@ def run_suite(args) -> Tuple[List[Dict[str, Any]], str, str, str | None]:
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# Outlier sets
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scenarios.append(Scenario("5% Outliers (3σ), Serial", 0.05, 3.0, args.rows_per_group, args.groups, 1, args.fitter, args.sigmaCut))
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scenarios.append(Scenario("10% Outliers (5σ), Serial", 0.10, 5.0, args.rows_per_group, args.groups, 1, args.fitter, args.sigmaCut))
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# High-outlier stress test
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scenarios.append(
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Scenario(
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"30% Outliers (5σ), Serial",
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0.30, 5.0,
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args.rows_per_group,
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args.groups,
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1,
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args.fitter,
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args.sigmaCut,
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)
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)
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if not args.serial_only:
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scenarios.append(
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Scenario(
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"30% Outliers (5σ), Parallel",
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0.30, 5.0,
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args.rows_per_group,
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args.groups,
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args.n_jobs,
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args.fitter,
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args.sigmaCut,
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)
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)
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if not args.serial_only:
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scenarios.append(Scenario("10% Outliers (5σ), Parallel", 0.10, 5.0, args.rows_per_group, args.groups, args.n_jobs, args.fitter, args.sigmaCut))
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scenarios.append(Scenario("10% Outliers (10σ), Serial", 0.10, 10.0, args.rows_per_group, args.groups, 1, args.fitter, args.sigmaCut))
@@ -206,7 +231,7 @@ def run_suite(args) -> Tuple[List[Dict[str, Any]], str, str, str | None]:
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def parse_args():
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p = argparse.ArgumentParser(description="GroupBy Regression Benchmark Suite")
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p.add_argument("--rows-per-group", type=int, default=5, help="Rows per group.")
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p.add_argument("--groups", type=int, default=10000, help="Number of groups.")
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p.add_argument("--groups", type=int, default=5000, help="Number of groups.")
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p.add_argument("--n-jobs", type=int, default=4, help="Workers for parallel scenarios.")
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p.add_argument("--sigmaCut", type=float, default=5.0, help="Sigma cut for robust fitting.")
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p.add_argument("--fitter", type=str, default="ols", help="Fitter: ols|robust|huber depending on implementation.")

UTILS/dfextensions/groupby_regression.md

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@@ -136,7 +136,7 @@ To evaluate scaling and performance trade-offs, a dedicated benchmark tool is pr
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```bash
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python3 bench_groupby_regression.py \
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--rows-per-group 5 --groups 10000 \
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--rows-per-group 5 --groups 5000 \
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--n-jobs 10 --sigmaCut 5 --fitter ols \
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--out bench_out --emit-csv
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```
@@ -146,18 +146,49 @@ Each run generates:
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* `benchmark_report.txt` – human-readable summary
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* `benchmark_results.json` / `.csv` – structured outputs for analysis
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### Example Results (50k rows / 10k groups ≈ 5 rows per group)
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| Scenario | Config | Result | Notes |
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| -------------------------- | ----------------------- | ---------------------- | --------------- |
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| Clean Data (Serial) | `n_jobs=1, σCut=5, OLS` | **1.75 s / 1k groups** | Baseline |
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| Clean Data (Parallel 10) | `n_jobs=10` | **0.41 s / 1k groups** | ≈ 4.3× faster |
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| 10% Outliers (5σ, Serial) | `n_jobs=1` | **1.77 s / 1k groups** | ≈ same as clean |
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| 5% Outliers (3σ, Serial) | `n_jobs=1` | **1.70 s / 1k groups** | Mild noise |
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| 10% Outliers (10σ, Serial) | `n_jobs=1` | **1.81 s / 1k groups** | Still stable |
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*Hardware:* 12‑core Intel i7, Python 3.11, pandas 2.2, joblib 1.4
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*Dataset:* synthetic (y = 2·x₁ + 3·x₂ + ε)
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### Example Results (25k rows / 5k groups ≈ 5 rows/group)
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**Command**
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```bash
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python3 bench_groupby_regression.py \
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--rows-per-group 5 --groups 5000 \
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--n-jobs 10 --sigmaCut 5 --fitter ols \
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--out bench_out --emit-csv
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```
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**Laptop (Mac):**
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| Scenario | Config | Result (s / 1k groups) |
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| ------------------------------- | ------------------------- | ---------------------- |
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| Clean Serial | n_jobs=1, sigmaCut=5, OLS | **1.69** |
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| Clean Parallel (10) | n_jobs=10 | **0.50** |
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| 5% Outliers (3σ), Serial | n_jobs=1 | **1.68** |
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| 10% Outliers (5σ), Serial | n_jobs=1 | **1.67** |
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| **30% Outliers (5σ), Serial** | n_jobs=1 | **1.66** |
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| **30% Outliers (5σ), Parallel** | n_jobs=10 | **0.30** |
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| 10% Outliers (10σ), Serial | n_jobs=1 | **1.67** |
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**Server (Linux, Apptainer):**
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| Scenario | Config | Result (s / 1k groups) |
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| --------------------------- | ------------------------- | ---------------------- |
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| Clean Serial | n_jobs=1, sigmaCut=5, OLS | **4.14** |
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| Clean Parallel (10) | n_jobs=10 | **0.98** |
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| 5% Outliers (3σ), Serial | n_jobs=1 | **4.03** |
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| 10% Outliers (5σ), Serial | n_jobs=1 | **4.01** |
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| 10% Outliers (5σ), Parallel | n_jobs=10 | **0.65** |
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| 10% Outliers (10σ), Serial | n_jobs=1 | **4.01** |
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*Dataset:* synthetic (y = 2·x₁ + 3·x₂ + ε)
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#### High Outlier Fraction (Stress Test)
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Even at **30% response outliers**, runtime remains essentially unchanged (no robust re-fit triggered by sigmaCut).
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To emulate worst-case slowdowns seen on real data, a **leverage-outlier** mode (X-contamination) will be added in a follow-up.
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### Interpretation
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@@ -175,6 +206,29 @@ Each run generates:
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| Heavy outliers (detector data) | Use `fitter='robust'` or `huber` and accept higher cost |
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| Quick validation | `bench_groupby_regression.py --quick` |
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Here’s a concise, ready-to-paste paragraph you can drop directly **under the “Interpretation”** section in your `groupby_regression.md` file:
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---
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### Cross-Platform Comparison (Mac vs Linux)
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Benchmark results on a Linux server (Apptainer, Python 3.11, joblib 1.4) show similar scaling but roughly **2–2.5 × longer wall-times** than on a MacBook (Pro/i7).
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For the baseline case of 50 k rows / 10 k groups (~5 rows/group):
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| Scenario | Mac (s / 1 k groups) | Linux (s / 1 k groups) | Ratio (Linux / Mac) |
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| --------------------------- | -------------------- | ---------------------- | ------------------- |
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| Clean Serial | 1.75 | 3.98 | ≈ 2.3 × slower |
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| Clean Parallel (10) | 0.41 | 0.78 | ≈ 1.9 × slower |
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| 10 % Outliers (5 σ, Serial) | 1.77 | 4.01 | ≈ 2.3 × slower |
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Parallel efficiency on Linux (≈ 5 × speed-up from 1 → 10 jobs) matches the Mac results exactly.
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The difference reflects platform-specific factors such as CPU frequency, BLAS implementation, and process-spawn overhead in Apptainer—not algorithmic changes.
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Overall, **scaling behavior and outlier stability are identical across platforms.**
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---
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### Future Work
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A future extension will introduce **leverage‑outlier** generation (outliers in X and Y) to replicate the observed 25× slowdown and allow comparative testing of different robust fitters.

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